Police arrested eight suspects in connection with the Mpeketoni attack and arraigned them in court. With the assistance of the Anti-Terrorism Police Unit (ATPU), the following individuals were identified as key suspects in the deadly attack:
- Joseph Mwangi
- John Mwangi
- Alex Mwanginga
- Yusuf Ali
- Mbaruk Hamad
- Lucas Bososi
- Cecely Njeri
- Idris Dada
Although Al-Shabaab claimed responsibility for the attack, the government, through President Uhuru, suggested that political instigators were involved. The revelation of the suspects' names may introduce a new aspect to the debate surrounding the attack.